Nah, because ideally most applications are using library/system services to fence their data structures. For the remaining cases the apps could be marked with a new application compatibility flag (this feature already exists in windows for older apps) which adds additional checking that flags pages which are being accessed from multiple contexts as requiring additional emulator level sequencing. There are ton of strategies here, which could be as simple as basically disabling multi threading in the emulator or a page ownership ping/pong, etc.
I hope the answer is not "by restricting all emulated threads to one CPU core".